PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0409.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 111aa    MW: 11734.4 Da    PI: 6.7574
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0409.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA321.7e-101241235
                 GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35
                         +Rrgp g++tLCnaCGl+ + kg+
  Kaladp0095s0409.2.p  1 MRRGPAGPRTLCNACGLMLANKGM 24
                         5*****************999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.95E-6133No hitNo description
CDDcd002023.76E-9131No hitNo description
PfamPF003204.4E-8123IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-9129IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MRRGPAGPRT LCNACGLMLA NKGMLRDLSK GGRNASFSQT ASGMPFDVKI SFANKGHIST  60
NHDQHIFAEA APIVNEGNDV SFIYGDEEVS ICSILEPGVA LPSYNMPMCS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664424.15e-24PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_015579792.15e-24PREDICTED: GATA transcription factor 20 isoform X2
TrEMBLF6H1476e-24F6H147_VITVI; Putative uncharacterized protein
STRINGVIT_18s0001g07730.t012e-23(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-15ZIM-LIKE 2